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1. Chiara M, Horner DS Towards a novel method for small indels detection using Illumina/Solexa data. Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: New tools for NGS Abstract: Missing |
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2. Horner DS, Pesole G The estimation of relative site variability among aligned homologous protein sequences Meeting: BIOCOMP 2003 - Year: 2003 Full text in a new tab Topic: Comparative genomics and molecular evolution Abstract: Missing |
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3. Horner DS, Pesole G Protein contact prediction with correlated mutation analysis using mixed physiochemical constraints Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements Abstract: Missing |
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4. Horner DS, Pirovano W, Pesole G Using phylogenetic information in the detection of correlated amino acid substitutions Meeting: BITS 2005 - Year: 2005 Full text in a new tab Topic: Unspecified Abstract: Much effort has been devoted to the detection, from multiple sequence alignments of homologous proteins, of pairs or groups of amino acid positions that evolve in a nonindependent – or compensatory – manner. It is expected that such clusters of positions might either tend either to be proximal in the mature, folded protein, or to be involved in similar aspects of protein function. Several such methods have been shown to be reasonably effective in the detection of intra-protein contacts. However, all of the most successful published algorithms rely on pairwise comparisons between aligned sequences. We wished to investigate whether evolutionary information (the topology and branchlengths of the phylogenetic tree describing relationships between the sequences under study) can allow an improvement in the prediction of intra protein contacts from correlated substitutions. |
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5. Horner DS, Re M, Nasi C, Pesole G Improving the capacity of the CSTMiner algorithm to correctly classify conserved sequences Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis Abstract: Missing |
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6. Mignone F, Re M, Horner DS, Pesole G A new strategy to identify novel genes and gene isoforms: whole genome comparison of human and mouse Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements Abstract: Missing |
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7. Picardi E, Horner DS, Chiara M, Pesole G Detection of alternative splicing in Vitis vinifera and validation by short sequencing reads Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Transcriptomics Gene Expression and Microarray Analysis Abstract: Missing |
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8. Picardi E, Horner DS, Chiara M, Schiavon R, Valle G, Pesole G Large scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Transcriptomics Abstract: Missing |
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9. Piccolo V, Pesole G, Horner DS A Support Vector Machine for the Discrimination of MicroRNA Precursors from Other Genomic Hairpin Structures Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Novel methodologies, algorithms and tools Abstract: Missing |
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10. Re M, Nasi C, Pesole G, Horner DS A Support Vector Machine for the Discrimination of Coding and Non-Coding Sequences that are Conserved Between Related Genomes. Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Novel methodologies, algorithms and tools Abstract: Missing |